The built-in version of site who is much nicer (especially with color enabled) so you probably want that. In which case just comment out or remove the nxTools "who" definition under [FTP_Custom_Commands]. BTW, that extra character at the end will go away in the next release...
If you wish to disable the built-in version, prefix the command under [FTP_Custom_Commands] with a "^". See the comments in that section for an example.
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