MTU/Packet size differences maybe? As MxxCon says a session log (infact post rush's log as well for comparison purposes) could be helpful. Although i am doubtful it will reveal much given their is no direct relation between PRET and transfer speeds. On top of posting both sessions logs i would suggest you compare some of the settings (both from within the programs and any ini-only settings) and do a little tweaking if neccersary.
As an afterthough (long shot?) are you running any kind of internet traffic software that may be misconfigured and limiting flashfxp in particular?
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