The common combo of ioFTPD, nxTools, and ioNiNJA work on the assumption that people upload to the right place. That's the way glftpd works as well and most automatic uploading tools work within that model. nxTools offers you ways to create dated dirs and links to the current day for different sections, etc. An additional "archive" script such as Jeza's (I forget the name of script) or the ancient WarArchive can be run periodically to move stuff to archive dirs when space gets low. You'd like for things to stay in place for weeks if not months though. It's pretty common for people to manually move the stuff they want to keep to an archive dir (online or offline) every few days/weeks and then free up lots of space that way.
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